_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 9e-76
 Query name: gi|361050316|dbj|BAL41419.1| glutathione peroxidase GPx1a [Thunnus orientalis]
 Query range: 1-189  (total 189)

 Target: /data/www-rg/seblastian_results/363844289/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  3440         3658
 -Exon 2  4494         4841

 Redox box: no

Query   MAVRRFYDLTVKLLSGETFSLSALKGKVVLIENVASLUGTTTRDYTQMNELHSRYSDKGLVILGVPCNQFGHQ <---Intron---> ENCKNDEILRS
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   835bp    > |||||||||||
Target  MAVRRFYDLTVKLLSGETFSLSALKGKVVLIENVASLUGTTTRDYTQMNELHSRYSDKGLVILGVPCNQFGHQ                ENCKNDEILRS
        aggaattgcagacctggatattgcagaggcagaggtctgaaaagtacaagcctcttgagcgacggctactgcc                gataaggacat
        tctggtaatctattcgactgtcctagattttaatcctggcccgaacataatacgacaagttttgtcgaatgaa                aagaaaattgc
        gtgagtccgatgggtaagctgtctggattctatcgtcaaaacgccaggcgtcttcccgacttgtgcctgtgtg                gtcgttacaat
                                             *                                                              

Query   LKYVRPGNGFEPNFQLLEKVDVNGKDAHPLFVYLKERLPSPCDDAMALMNDPKFIIWSPVSRNDVSWNFEKFLVSPDGEPYKRYSRNFLTIDIEADIKEL
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  LKYVRPGNGFEPNFQLLEKVDVNGKDAHPLFVYLKERLPSPCDDAMALMNDPKFIIWSPVSRNDVSWNFEKFLVSPDGEPYKRYSRNFLTIDIEADIKEL
        catgccgagtgcatcccgagggagaggccttgttagacctctgggagcaagcataatacgaaaggttatgatcgacgggctactaaatcaagagggaagc
        taatgcgagtacatattaatatagaacactttataagtcccgaactcttaacatttggctggaatcgataatttgcagacaagaggattctatacataat
        gatctagtctaatcgttgggtgtaatctcgtgtagagcacctctcgtcgttagcctgttctgccccgctggcgctttggccacccgtccctctgattagg
                                                                                                            

Query   LKRVK
        |||||
Target  LKRVK
        caaga
        tagta
        aggcg
             
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 168 ; UGA-SECIS: 621

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 5010 - 5081
 Found by:  Infernal (score=39.95) Covels (score=30.54)
 Stem2 length = 9   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -11.79

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..([(((((---....{[[{(({(((((((......-..........)))))))}))}]]}..--....)))))])..
 target  CAUGUUUAC---UCUAUGAUGACACUCCUUGAAACC-UUUUUUGUGAGGGGAGUUUCUGAUGC--AUAUGUAAAAGCC
                         ****           ^^^                       ****